The museum comprises ten zones, labeled A to J. The themes of each zone are as follows.

| Zone A | : | Impossible motion, impossible solids (Sugihara) |
| Zone B | : | Floating visual illusions (Arai and Arai), visual cryptography (Yamaguchi) |
| Zone C | : | Hybrid images (Yamaguchi) |
| Zone D | : | Visually illusory opposite color tops (Fukuda and Ueda), homeostasis in eye color (Kitaoka) |
| Zone E | : | Library and study corner, system for creating Escher-style tiling patterns (Sugihara) |
| Zone F | : | Fractal spiral illusions, letter row tilt illusions (Arai and Arai) |
| Zone G | : | Support system for creating applied illusion web content (Miyashita), 3D CG expression of impossible solids (Miyashita and Shinohara) |
| Zone H | : | Experimental device for measuring vertical inclined illusions (Tomoeda) |
| Zone I | : | Illusory art and floor tiles (Kitaoka) |
| Zone J | : | Illusory art tapestries (Kitaoka) |
For highlights of the museum and information on the exhibits, visit this page.